PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00105354001
Common NameGSBRNA2T00105354001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family RAV
Protein Properties Length: 326aa    MW: 36422.7 Da    PI: 9.5637
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00105354001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.56e-1258106155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+ ++ a  +++g
  GSBRNA2T00105354001  58 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARSYDVAVYRFRG 106
                          89****9888.8*********3.....5**********99***********9998 PP

2B3101.25.9e-32169272199
                          EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          f+k+ tpsdv+k++rlv+pk++ae+h     ++++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++L +gD+v F+++
  GSBRNA2T00105354001 169 FEKAVTPSDVGKLNRLVIPKHHAEKHfplpsSNVSVKGVLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLLAGDVVSFSRS 258
                          89****************************9888889***************************************************98 PP

                          SSSEE..EEEEE-S CS
                   B3  86 grsefelvvkvfrk 99 
                          + ++++l++++ ++
  GSBRNA2T00105354001 259 EGQDQQLYIGWKSR 272
                          87999999999776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.82E-2558116No hitNo description
SuperFamilySSF541712.22E-1658114IPR016177DNA-binding domain
PfamPF008473.2E-758106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-2059115IPR001471AP2/ERF domain
PROSITE profilePS5103220.25759114IPR001471AP2/ERF domain
SMARTSM003807.9E-2859120IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.4E-40163275IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.32E-32168275IPR015300DNA-binding pseudobarrel domain
CDDcd100171.97E-27168260No hitNo description
SMARTSM010193.2E-25169273IPR003340B3 DNA binding domain
PROSITE profilePS5086314.057169273IPR003340B3 DNA binding domain
PfamPF023626.0E-29169272IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEVSSVDEST TSTGSICETP AMTSAKSSVN LHRMGSGSSV VLDSENGVEA ESRKLPSSKY  60
KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE DEAARSYDVA VYRFRGRDAV TNFKEARLDD  120
GEVEFLSSHS KAEIVDMLRK HTYSEELEQS KRRRNGNGNT ARTSAEALFE KAVTPSDVGK  180
LNRLVIPKHH AEKHFPLPSS NVSVKGVLLN FEDVTGKVWR FRYSYWNSSQ SYVLTKGWSR  240
FVKEKNLLAG DVVSFSRSEG QDQQLYIGWK SRSGPDVETG RVLRLFGVNI SPESSRTEVV  300
GSKRVNDTEM LSLVCSKKQR IFHAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-7416527910124DNA-binding protein RAV1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.46140.0leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00105354001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530750.0AK353075.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-J24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009148531.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotQ9ZWM90.0RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A078E9W70.0A0A078E9W7_BRANA; BnaA06g07470D protein
STRINGBra019821.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.10.0related to ABI3/VP1 1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]